Index

B

baranyi_roberts_gd() (in module curveball.competitions)

baranyi_roberts_lv() (in module curveball.competitions) bootstrap_params() (in module curveball.models)

C

calc_weights() (in module curveball.models) compete() (in module curveball.competitions) cooks_distance() (in module curveball.models) curveball.competitions module curveball.ioutils module

curveball.likelihood module curveball.models module curveball.plots module curveball.scripts.cli module

D

derivative() (in module curveball.models) double_baranyi_roberts_gimenez_delgado_ode() (in module curveball.competitions) double_baranyi_roberts_ode0() (in module curveball.competitions) double_baranyi_roberts_ode1() (in module curveball.competitions) double_baranyi_roberts_ode2() (in module curveball.competitions)

double_baranyi_roberts_ode3() (in module curveball.competitions) double_baranyi_roberts_ode4() (in module curveball.competitions) double_baranyi_roberts_ode5() (in module curveball.competitions) double_baranyi_roberts_ode6() (in module curveball.competitions) double_baranyi_roberts_ode7() (in module curveball.competitions) double_baranyi_roberts_ode8() (in module curveball.competitions)

F

find_all_outliers() (in module curveball.models) find_K_ci() (in module curveball.models) find_lag() (in module curveball.models) find_lag_ci() (in module curveball.models) find_max_growth() (in module curveball.models) find_max_growth_ci() (in module curveball.models)

find_min_doubling_time() (in module curveball.models) find_min_doubling_time_ci() (in module curveball.models) find_outliers() (in module curveball.models) find_plate_file() (in module curveball.scripts.cli) fit_exponential_growth_phase() (in module curveball.models) fit_model() (in module curveball.models) fitness_LTEE() (in module curveball.competitions)

G

get_filename() (in module curveball.scripts.cli)

get_models() (in module curveball.models)

H

has_lag() (in module curveball.models)

has_nu() (in module curveball.models)

I

information_criteria_weights() (in module curveball.models)

is_model() (in module curveball.models)

L

load_plate() (in module curveball.scripts.cli) loglik() (in module curveball.likelihood)

loglik_r_nu() (in module curveball.likelihood) loglik_r_q0() (in module curveball.likelihood) lrtest() (in module curveball.models)

M

module curveball.competitions curveball.ioutils curveball.likelihood curveball.models curveball.plots curveball.scripts.cli

P

plot_loglik() (in module curveball.likelihood) plot_model_loglik() (in module curveball.likelihood) plot_model_residuals() (in module curveball.plots) plot_params_distribution() (in module curveball.plots)

plot_plate() (in module curveball.plots) plot_residuals() (in module curveball.plots) plot_sample_fit() (in module curveball.plots) plot_strains() (in module curveball.plots) plot_wells() (in module curveball.plots)

R

read_curveball_csv() (in module curveball.ioutils) read_sunrise_xlsx() (in module curveball.ioutils) read_tecan_mat() (in module curveball.ioutils)

read_tecan_xlsx() (in module curveball.ioutils) read_tecan_xml() (in module curveball.ioutils) ridge_regularization() (in module curveball.likelihood)

S

sample_params() (in module curveball.models)

selection_coefs_ts() (in module curveball.competitions)

T

tsplot() (in module curveball.plots)

W

where() (in module curveball.scripts.cli)

write_curveball_csv() (in module curveball.ioutils)